fatal error in mpi_abort invalid communicator error stack Kirkland Washington

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fatal error in mpi_abort invalid communicator error stack Kirkland, Washington

Here is the output > on the system with the Invalid communicator errors: > > $ mpicc -show > icc -D_EM64T_ -D_SMP_ -DUSE_HEADER_CACHING -DONE_SIDED > -DMPID_USE_SEQUENCE_NUMBERS -D_SHMEM_COLL_ -I/usr/include -O2 > -I/opt/mvapich/2-0.9.8-2007.08.30/include Here is how I initialize the MPI Library subroutine init() integer :: provided call mpi_init(mpi_err) call mpi_comm_rank(mpi_comm_world,rank,mpi_err) call mpi_comm_size(mpi_comm_world,an_proc,mpi_err) call MPI_BARRIER(MPI_COMM_WORLD,mpi_err) end subroutine init fortran mpi fortran90 fortran77 mpich share|improve this Can two integer polynomials touch in an irrational point? I appreciate all that can help me!

Best performance with mvapich2/1.4rc2 for not more than 256 cores. Replace lines matching a pattern with lines from another file in order Can an ATCo refuse to give service to an aircraft based on moral grounds? Re:mpich/libmetis error 5 years 6 months ago #1262 olslewfoot OFFLINE Senior Boarder Posts: 66 Thank you received: 1 Hi all By adding the ./ I do get a different error. Additionally of course the NEB > code which used PIMD does not work. > > Any suggestions?

Create an account Forum Installation Linux Version mpich error Flat Threaded Page:123 TOPIC: mpich error Re:mpich/libmetis error 5 years 6 months ago #1258 olslewfoot OFFLINE Senior Boarder Posts: 66 Thank you is it because mpich was not compiled truely or the coawstM is not working for a reason? The flags I'm using to compile the code are: For the compiler: LN_FLAGS= -lm -larpack -lsparskit -lfftw3 -lrt -llapack -lblas For MPI linker: LN_FLAGS_MPI= $(LN_FLAGS) -I$(MPIHOME)/include -L$(MPIHOME) $(MPIHOME)/lib/libmpich.a -lfmpich -lopa -lmpe If I try to run PIMD itself: > > export DO_PARALLEL='mpirun -np 8' > cd $AMBERHOME/test/ > make test.sander.PIMD.MPI.partial > > These all pass. > > make test.sander.PIMD.MPI.full > > Everything

The size of the descriptor array that PSCASUM expects is 11, whereas the size of the standard descriptor used elsewhere in SCALAPACK is 9. Ubuntu 14.04, dolfin 1.3.0 built from source via dorsal commented Aug 13, 2014 by Jan FEniCS User (7,760 points) I am running fenics on Ubuntu 14.04 and I installed fenics using the part that contains the calls to MPI_INIT and to MPI_COMM_RANK. –Hristo Iliev Oct 19 '12 at 11:33 add a comment| 1 Answer 1 active oldest votes up vote 4 down aborting job: Fatal error in PMPI_Waitall: Invalid MPI_Request, error stack: PMPI_Waitall(274): MPI_Waitall(count=1, req_array=0xb7ae70, status_array=0x2aaab2ef8010) failed PMPI_Waitall(250): The supplied request in array element 0 was invalid (kind=15) aborting job: Fatal error in

I'll get more explicit >>> version info (OFED and MVAPICH2) if you tell me what and where >>> to look. >> >> That's the information we were looking for. How to cope with too slow Wi-Fi at hotel? Send feedback Syndicate this site RSS ATOM

ScaLAPACK Archives next> next> [Scalapack] Possible bug in SCALAPACK/PBLAS From: Ali Uzun Date: Tue, 14 Aug 2012 10:09:14 -0400 Dear SCALAPACK Hope this helps, Sylvain On Thu, 13 Sep 2007, Nathan Dauchy wrote: > We have also run into a very similar sounding problem, with > mvapich2-0.9.8-2007.08.30 and intel-9.1. > > mpiexec

I spent almost 2 weeks trying to solve this problems because I really need to run this code in my personal computer to work at home. They may cause unexpected problems or lead to poor performance. This is solved now (since 3. It seems to be irreparably broken in > parallel.

I will greatly appreciate any help you can provide about this matter. It will give you the correct hostname (as long as you're not working on a cluster nor through a workload scheduler). The conference program is available online at the following address: http://www.eau-mer-f[...] 31 August 2016 2016 User Conference programme 11 April 2016 TELEMAC summer school 2016 14 March 2016 Post-doctoral position: Seagrass Top Log in to post comments Carlos Antonio Ribeiro Duarte Sat, 10/20/2012 - 03:41 Recently I was trying to compile and run my mpi code on a single machine (Ubuntu 12.04

Re: amber-developers: Testing of PIMD / NEB? (Broken in AMBER 10) This message: [ Message body ] [ More options (top, bottom) ] Related messages: [ Next message ] [ Previous My program crashes with the following error log when the PBLAS routine PSCASUM is called by PCTREVC. Solution: Remove -132 flag from FFLAGS and set FIXEDFLAGS := -132 And remove -FR flag or unset FREEFLAGS for brutus_io svn diff Machines/Macros.Linux.ia64.brutus_io ... +FFLAGS := -c -DLINUX -fp-model precise -O2 EvenSt-ring C ode - g ol!f Was the Balrog of Moria aware of the presence of the One Ring during the events of Khazad-dûm?

Fri, 06/15/2012 - 11:50 You don't even mention which MPI version you have. The cluster had a modules system to set up user environments, and >> it ended up causing a different mpi.h file to be included, instead of >> the one that was Cheers John The administrator has disabled public write access. More info see below -> Problem Section Performance Performance on infiniband nodes is as good or even better than on quadrics nodes.

Did Sputnik 1 have attitude control? If I run a script in command line with import fenics import vtk it won't work, whereas removing either line works. However, the >>> responses received to date indicate that the problem is not >>> a known issue with MVAPICH2 and Intel compilers and thus must >>> be a setup issue on asked 3 years ago viewed 1697 times active 3 years ago Related 1Error: Unexpected end of format string in format string, fortran 900Fatal error of using MPI in GPU MapReduce0ifort mpi-openmp

Browse other questions tagged fortran mpi fortran90 fortran77 mpich or ask your own question. Sat, 10/20/2012 - 07:08 If you trot out your web search engine and loop up this mpich error message, you will see that a common (but far from only) cause is Ali Uzun ERROR LOG: PBLAS ERROR 'Parameter number 602 had an illegal value' from {-1,-1}, pnum=-1, Contxt=0, in routine 'PSCASUM'. {-1,-1}, pnum=5632, Contxt=0, killed other procs, exiting with error #-602. E.g. > cd PIMD/full_cmd_water/equilib && ./Run.full_cmd > Testing Centroid MD > [cli_3]: aborting job: > Fatal error in MPI_Reduce: Invalid communicator, error stack: > MPI_Reduce(843): MPI_Reduce(sbuf=0x1614130, rbuf=0x60b2330, count=28, > MPI_DOUBLE_PRECISION, MPI_SUM,

The -12 is the RPM version >> number, which has to be incremented whenever there is any SRPM change. >> That should correspond to the latest MVAPICH2. As your code is written, mpi_comm_world is assigned randomly by the compiler and has no association with the actual mpi_comm_world communicator handle provided by mpi. It does not compile with sun_studio/12.1. Thanks, Wesley On Nov 29, 2014, at 10:00 PM, نازنین > wrote: please give me more detail .

All material on this collaboration platform is the property of the contributing authors. FYI, my SCALAPACK library version is 2.0.1, LAPACK library version is 3.4.0 and PBLAS library version is 2.0. Top Log in to post comments Tim P. Also, you should check to make sure the mpicc you're using is from the correct MPI implementation too (i.e., "which mpicc"). -d On Feb 24, 2011, at 7:29 PM, Hong-Jun Kim

A question..? it is my first time running a mpi ....