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There are many debuggers, and you will probably come to know and love gdb for its power and ubiquity. propagating ancestral breakpoints recursive anchor search 0,0 have 2228 new matches outside LCBs 0,0 has an additional 9484 matches Restoring backed up alignment tree... 1,0 has 9484 pairwise matches Performing Sum-of-pairs Constructing seed occurrence lists for repeat detection Calculating pairwise breakpoint distances Pair 0, 1 has 15449 initial LCBs Using scaled bp penalty: 277934 Pair (0,1) has 3 well-supported breakpoints genome content gap character encountered at genome sequence position 2903159 > > Creating sorted mer list > Create time was: 2 seconds. > Creating sorted mer list > Input sequences must be unaligned

However, the sequences in the fasta are unwrapped (ABySS doesn't support wrapped fasta sequences in either input or output), and the longest such entry is 62225 bp. Using weight 15 mers for initial seeds Creating sorted mer list Create time was: 2 seconds. Creating sorted mer list Create time was: 2 seconds. 0%..1%..2%..3%..4%..5%..6%..7%..8%..9%..10%.. 11%..12%..13%..14%..15%..16%..17%..18%..19%..20%.. 21%..22%..23%..24%..25%..26%..27%..28%..29%..30%.. 31%..32%..33%..34%..35%..36%..37%..38%..39%..40%.. 41%..42%..43%..44%..45%..46%..47%..48%..49%..50%.. 51%..52%..53%..54%..55%..56%..57%..58%..59%..60%.. 61%..62%..63%..64%..65%..66%..67%..68%..69%..70%.. 71%..72%..73%..74%..75%..76%..77%..78%..79%..80%.. 81%..82%..83%..84%..85%..86%..87%..88%..89%..90%.. 91%..92%..93%..94%..95%..96%..97%..98%..99%..done. initializing alignment tree...

propagating ancestral breakpoints recursive anchor search 0,0 have 1161 new matches outside LCBs 0,0 has an additional 7970 matches Restoring backed up alignment tree... 1,0 has 7970 pairwise matches Performing Sum-of-pairs The def lines contain only numbers, spaces, "+" signs, "-" signs, and "," (commas). It isn't the first line ending with a "-" and it isn't the longest one, but at that point I gave up ... All but the most basic text editors will be able to change >encoding from unicode to ascii.

The following assumes that you are in the base directory of an ns-3 distribution (the directory where RELEASE, VERSION and src are found). propagating ancestral breakpoints recursive anchor search 0,0 have 2064 new matches outside LCBs 0,0 has an additional 5000 matches Restoring backed up alignment tree... 1,0 has 5000 pairwise matches Performing Sum-of-pairs I hope this observation helps in solving this problem. The caller now needs to enumerate the files to find the changes. 1051 A stop control has been sent to a service that other running services are dependent on. 1052 The

propagating ancestral breakpoints recursive anchor search 0,0 have 1747 new matches outside LCBs 0,0 has an additional 8180 matches Restoring backed up alignment tree... 1,0 has 8180 pairwise matches Performing Sum-of-pairs The LAN Manager password returned is a NULL string. 1305 The revision level is unknown. 1306 Indicates two revision levels are incompatible. 1307 This security ID may not be assigned as Many of us learned the hard way by having many, many bugs master us. If I try running mauve I get the following: > > OS name is: Mac OS X arch: x86_64 > Executing: > /Applications/Mauve.app/Contents/MacOS/progressiveMauve --output=ABySS test --output-guide-tree=ABySS test.guide_tree --backbone-output=ABySS test.backbone /Users/guy/CP001918-20.gbk /Users/guy/Ecl13047-contigs.fa

The join or form operation was aborted. 5078 The specified resource type was not found. 5079 The specified node does not support a resource of this type. Performing final pass iterative refinement 0%..1%..2%..3%..4%..5%..6%..7%..8%..9%.. 10%..11%..12%..13%..14%..15%..16%..18%..19%.. 20%..21%..22%..23%..24%..25%..26%..27%..28%..29%.. 30%..31%..32%..33%..34%..35%..36%..37%..38%..39%.. 40%..41%..42%..43%..44%..45%..46%..47%..48%..49%.. 50%..51%..52%..53%..54%..55%..56%..57%..58%..59%.. 60%..61%..62%..63%..64%..65%..66%..67%..68%..69%.. 70%..71%..72%..73%..74%..75%..76%..77%..78%..79%.. 80%..81%..82%..83%..84%..85%..86%..87%..88%..89%.. 90%..91%..92%..93%..94%..95%..96%..97%..98%..99%.. 100%..Fix left ends done. Checking pre-requisites... To start viewing messages, select the forum that you want to visit from the selection below.

get ancestral matches Performing Sum-of-pairs Greedy Breakpoint Elimination construct LCB tracking matches There are 17131 tracking matches There are 34262 / 51393 components used init tracking match LCB tracking pairwise score Aligning node 1 to 2 via 0! propagating ancestral breakpoints recursive anchor search 0,0 have 2228 new matches outside LCBs 0,0 has an additional 9484 matches Restoring backed up alignment tree... 1,0 has 9484 pairwise matches Performing Sum-of-pairs Use your global user account or local user account to access this server. 1810 The name or security ID (SID) of the domain specified is inconsistent with the trust information for

root alignment has 11 superintervals root alignment length: 4923049 Organisms have 38.3% GC Completed without error. Genome conservation distance matrix: 0 0.119988 0.119988 0 Writing guide tree to /Users/markmandel/Documents/Molecules/mauve/110502 - 1059-1125 MCM/alignment1/alignment1.guide_tree reading tree... in a script), it can mean you don't even have rsync binary installed on your system. Is there a maximum line length being assumed?

Standard C only says that exit(0) or exit(EXIT_SUCCESS) indicate that the program is successful, and that exit(EXIT_FAILURE) indicates an error of some kind. (Returning a value from main is equivalent to http://p.sf.net/sfu/intel-dev2devmay_______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users Previous message View by thread View by date Next message Reply via email to Search the site The Mail Archive home mauve-users - all messages cp examples/tutorial/hello-simulator.cc scratch/hs.cc Now pull up the file you just created (scratch/hs.cc) in you favorite programmer's editor and add a line so that the main funtion looks like this: int main Execution of your program will be stopped at the first source line in main which is the NS_LOG_UNCOND that prints "Hello Simulator".

Verify that the patch package exists and that you can access it, or contact the application vendor to verify that this is a valid Windows Installer patch package. 1636 This patch get ancestral matches Performing Sum-of-pairs Greedy Breakpoint Elimination construct LCB tracking matches There are 17157 tracking matches There are 34314 / 51471 components used init tracking match LCB tracking pairwise score How to get this substring on bash script? Using weight 15 mers for initial seeds Creating sorted mer list Create time was: 2 seconds.

It's up to the author of the program to decide what exit codes they wish to use. all praise BBEdit, but enough is enough. Genome conservation distance matrix: 0 0.11996 0.11996 0 Writing guide tree to /Users/markmandel/Documents/Molecules/mauve/110502 - 1059-1125 MCM/alignment3/alignment3.guide_tree reading tree... Retrieved from "https://lxadm.com/index.php?title=Rsync_exit_codes&oldid=255" Categories: Short tips and fixesRsync Navigation menu Personal tools TalkContributionsCreate accountLog in Namespaces Page Discussion Variants Views Read Edit View history More Search Navigation Main pageRecent changesRandom page

initializing alignment tree... Constructing seed occurrence lists for repeat detection Calculating pairwise breakpoint distances Pair 0, 1 has 8168 initial LCBs scoring error scoring error scoring error scoring error scoring error scoring error scoring The following script will help in getting the Exit/Error code of Application installation else on can get it from log file. Under Linux and most other Unix variants, the signal number 11 indicates a segmentation fault, as remarked by Kerrek SB.

Any tips would be appreciated. The file to be replaced has retained its original name. 1177 Unable to move the replacement file to the file to be replaced.