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Please refer to GeneSpring manual for details on supported file formats. This type of license can only be activated on individual machines, and cannot be transferred to other machines without being surrendered on the previous machine first. With these changes Genespring would recognize the files and import it to create an experiment. If the server is installed on Linux or Mac, please refer to the Floating License Server administration details in the FloatingServer.pdf document in the Floating License Server installation directory.

On average across different types of tissues, we can expect that 20% of the genes are not expressed. Copying the data folder from one machine to another machine does not allow the data transfer. In addition to baseline transformation to the median of all samples or of control samples, user can now choose mean of all samples or of control samples. After creating the custom technology, you could create the experiment under ‘Generic Single color’ Experiment Type.

Q8. Please download the approprite technology from GeneSpring update server before you try to load the data for analysis. How I can merge the 3 experiments in GeneSpring? Q9.

The user could create the custom technology followed by Generic experiment creation to be able to change the threshold value. How could I enable it? GeneSpring WG_Client Floating License on the other hand is not machine specific and can be used on multiple machines simultaneously by connecting to the Floating License Server to be served an Thresholding the data to 1 is convert the values which are less than 1 to 1.

Browse through the chromosome : Below are the options to browse through the chromosome in Genome Browser: Use zoom function from tool bar Use double click to zoom in and shift+double A fixed license is specific for a single machine and can be accessed by a single user at any given time, whereas a floating/concurrent license can be used by multiple users Below is the list of plots supported in GeneSpring for different categories of sample metadata: ● Heatmap- Both numeric and categorical ● Scatter plot- Only numeric ● Profile plot- Only numeric Both Raw and Normalized values can be viewed in single and multiple histograms.

In 64-bit machine, in 'Remote Desktop' mode, 'Export as image' on right click from inside the Genome Browser tracks works only with 'jpg' or 'jpeg' extension. To work with Illumina files in GeneSpring, export the files in GeneSpring format. This has been fixed. What we are saying is that if an intensity value of a probe set is below the 20th percentile in that sample, the gene is probably not expressed in that sample.

Entities within a Condition Tree can now be ordered according to various annotation values such as gene symbol or GO terms. Open the document named FloatingServer.htm and follow the installation instructions for the Linux platform. Now the same Order ID can be used on another system. Is there a similar option in the latest GeneSpring version?

Note: Once the data files are imported into GeneSpring GX to create an experiment, the data files are converted into samples and would be stored in the database. What is the difference between PLIER and IterPLIER? Now, the experiment is created with the pre-normalized data. Even after upgrading to GeneSpring GX 11 the old samples would not be available on searching in 'Advanced Search' mode.

Backup and delete all the files. All the samples are extracted from the chips with similar design Ids. No, the license for GeneSpring WorkGroup is different from the license for the Floating License Server. Use right click on the sample name in ‘Experiment Navigator’ and select ‘Inspect Sample’ option to launch the inspector.

Q8. How can I proceed? How can I set up the Floating License Server on my computer? Enter the region of interest in the chromosomal coordinates b.

I have a file with annotation information for my genes of interest. A client should do the following to access the new Floating License Server: Navigate to folder. You could get this error for the following reasons: Reason1: This error could occur while creating the experiment, if the ‘Experiment type’ chosen does not match the data files. Select the export type from “Report, Image, or Html” and whether you want to export the Detailed or the Combined View”.

The compressed (zipped) \bin\license folder. Then, import the files under 'Generic Single Color' experiment type. This has been fixed. What should I do?

Export to eArray Q1. Raw or normalized values can be plotted in log10 or linear scale in Scatter or Profile Plot. Q17. Creation of Biological Genome from NCBI failed because NCBI changed the directory of the ALL Data.gene_info.gz file that GeneSpring was pointing to.

I have created an Organism by mistake.