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DYNA Tool:    check-failed  –xnan  –a4nan Animator:  Read in the Session-File ´fail-ide.ses´ . Hi Jedwards,Thanks for your reply. NaN („Not a Number“): http://en.wikipedia.org/wiki/NaN Node forces/ -moments/ -velocities with NaN occur due to different reasons – e.g. A branch is much more restrictive. In user_nl_clm:finidat = '/glade/p/cesm/amwg/hannay/inputdata/FAMIPC5_ne120_79to05_03_omp2/rest/2000-01-01-00000/FAMIPC5_ne120_79to05_03_omp2.clm2.r.2000-01-01-00000.nc'MAke sure you are setting SSTICE_DATA_FILENAME and teh correpsonding variables for SST/ICE in env_run.xml   Top Log in or register to post comments November

Steve - Intel Developer Support Top Back to original post Leave a Comment Please sign in to add a comment. So Can finidat be used in the startup run?  - In user_nl_cam, Is it necessary to add the following? But the error message bothered me again when I wanted to relax 132 atoms. FFFFE40E Unknown Unknown Unknown forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source .

What does NaN mean? symmetry adapt = T Here is snippet from the output Forming initial guess at 1.1s Error in pstein5. mixing ratio violated at  144 points.  Reset to  1.0E-36 Worst =-1.9E-12 at i,k=  14 26 QNEG3 from vertical diffusion/SO2:m= 86 lat/lchnk=    504 Min. FFFFE410 Unknown Unknown Unknown [node1][0,1,12][btl_tcp_frag.c:202:mca_btl_tcp_frag_recv] mca_btl_tcp_frag_recv: readv failed with errno=104 forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source .

Thanks for your reply. The preceding lines are something like: INFO: 0031-251  task 3554 exited: rc=1The case directory is /glade/u/home/yingli/cesm_1_2_2/runs/f.FAMIPC5.ne120_ne120.test.007  Top Log in or register to post comments October 31, 2014 - 8:14am #4 If you have access to an older version of Intel compilers, I would suggest you to switch to it or, as a second -- even safer -- alternative, you might want Here are the settings export NWCHEM_TOP=/usr/local/NWChem-6.1.1 export LARGE_FILES=TRUE export TCGRSH=/usr/bin/ssh export NWCHEM_TARGET=LINUX64 export USE_MPI=y export USE_MPIF=y export NWCHEM_MODULES=all export USE_MPIF4=y export MPI_LOC=/usr/local/openmpi/1.6.3/enet/intel13 export MPI_LIB=/usr/local/openmpi/1.6.3/enet/intel13/lib export MPI_INCLUDE=/usr/local/openmpi/1.6.3/enet/intel13/include export LIBMPI="-lmpi_f90 -lmpi_f77 -lmpi -ldl I set a lower limit ntpr=1 and nstlim=10 , the simulation ends without any errror , the structure looks stable ( sorry for the mistake previously i loaded the .rst file

Terminated> forrtl: error (78): process killed (SIGTERM)> Image PC Routine Line Source> vasp 0000000000586BDE Unknown Unknown Unknown> vasp 0000000000422A1F Unknown Unknown Unknown> vasp 000000000040871C Unknown Unknown Unknown> libc.so.6 000000350EA1ECDD Unknown Unknown Any suggestion will be highly welcome. Thanks for your timly reply. I tried the start-up run with both tags and have successfully archived history files. LWAVE = .TRUE.

Command-Line:  checknan=1 Keyword:     *CONTROL_SOLUTION, ISNAN=1 . MPI_ALLREDUCE  What I noticed is that ALL the simulations crash after a fixed number of iterations. Same error occurs even in > > water environment .The .rst file cannot be used again and the simulation > > gets aborted. > > > > forrtl: error (78): process Visualization of output by checknan option (nodes)?

FFFFE410 Unknown Unknown Unknown [node8][0,1,23][btl_tcp_frag.c:202:mca_btl_tcp_frag_recv] mca_btl_tcp_frag_recv: readv failed with errno=104 forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source . Asa Member Profile Send PM Just Got Here Threads 1 Posts 4 1:06:07 PM PST - Tue, Nov 20th 2012 Quote:Edoapra Nov 20th 10:15 amAsa, Could you please describe your compilation How many? check-failed –l mes* check-failed –pid –l mes* (Which PIDs are affected?) Which are the last messages in STDOUT / STDERR / mes00xx?

Tai Top Log in or register to post comments March 2, 2016 - 1:36pm #31 [email protected] The standard error file > consists of the following error . plastic strains, etc.. . . e.g.

URL: http://pwscf.org/pipermail/pw_forum/attachments/20081111/09997556/attachment-0002.html Previous message: [Pw_forum] specifying OH,ON etc in input files Next message: [Pw_forum] Could you please help me to cope with the error message Messages sorted by: [ date ] Visit: Board index The team • Delete all board cookies • All times are UTC - 5 hours [ DST ] Powered by phpBB © 2000, 2002, 2005, 2007 phpBB Group forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source . forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source .

Copyright 2016 by LSTC Inc and DYNAmore GmbH Legal Notice Contact Disclaimer Sitemap ABINIT Discussion Forums The meeting place for ABINIT users and developers Main site Download Documentation Tutorials Skip to for better understanding my question, I will show the detail of my systems as follows, there are 8 nodes in my cluster with the Ethernet. forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source . Login Skip to content Advanced search Board index Change font size FAQ Register Login Information The requested topic does not exist.

eval is different on processors 0 and 1 It means that the parallel eigensolver is failing. I relaxed the time limit and the run went fine. The DEBUG has always been turned on, and there is a core file of 254M in the run directory. So, I believe that somehow MPI_REDUCE call fills up memory somewhere, and when that reaches maximum, the code crashes.  Here is my 'ulimit -a' core file size          (blocks, -c) 0 data

forrtl: error (78): process killed (SIGTERM) I tried to start a branch run with model version cesm1_3_beta01. The error message in cesm.log.141030-124253 showing the following information in several places.   forrtl: error There aren't any error messages in other logs either. Tai Top Log in or register to post comments June 17, 2015 - 1:40pm #27 jedwards It's difficult to tell if the model is stopping because you've run out of time Below is my understanding, please correct me if I miss anything. 1.

I could relax 72 atoms successfully with my system using openmpi. i dont think adding ligand molecule ( 12-15 atoms ) should make such a big difference in the simulation time. division by zero http://www.dynasupport.com/howtos/general/not-a-number-nan-1 . I tried this tag: /glade/p/work/hannay/cesm_tags/cesm1_3_beta02_mods,and still got the error message like this:6604:INFO: 06605:INFO: 0031-306  pm_atexit: pm_exit_value is 1.6611:forrtl: error (78): process killed (SIGTERM)6611:Image              PC     

mixing ratio violated at    2 points.  Reset to  1.0E-36 Worst =-3.0E-12 at i,k=   5 26forrtl: error (78): process killed (SIGTERM)Image              PC     Steve - Intel Developer Support Top Asif u. check-hsp, check-failed, check-c, plotcprs are DYNAmore tools (free for customers: http://www.dynamore.de/tools) . . I have modified the CAM and CLM namelists quite a bit and didn't expect them to cause problem, but please check.

And for certain input files, I get the same errors when running with a particular number of procs. eval is different on processors 0 and 1 Error in pstein5. Could someone give me some suggestions to cope with this? FFFFE410 Unknown Unknown Unknown mpirun noticed that job rank 14 with PID 3519 on node node3 exited on signal 11 (Segmentation fault).