except getopt.error msg invalid syntax Delia Kansas

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except getopt.error msg invalid syntax Delia, Kansas

bugs will keep on popping up. This feature has been backported to python2.6 as well. bowtie2 tophat2 vesion total 28852 drwxrwxr-x. 5 pielab pielab     4096 Feb 27  2013 bowtie2-2.1.0 -rw-rw-r--. 1 pielab... Already have an account?

Pages: 1 Topic closed #1 2010-12-01 10:04:09 scjet Member Registered: 2010-12-01 Posts: 1,461 Python syntax errors: oblogout, archbey, Transparency/tint2 issues ? Feel free to reopen when you've got more to share ! Granted, I really like this Openbox, it's very cool -similar to CrunchBang!... Tophat_Reports "Failed" Error Hi, Has anyone get tophat2 to work for the fusion search?

it is working now =) –lagarkane Feb 16 '13 at 10:13 I'd add that if the OP wants code that's compatible with python<2.6 then he should use except getopt.GetoptError: Linked 170 Python try…except comma vs 'as' in except 1 Eclipse PyDev - my build is clean yet I get Syntax Error at runtime Related 1269Catch multiple exceptions at once?389Try/Except in Is there any job that can't be automated? anyone else notice any of the above ?

But I have a que... I'm using Python 2.5 on Windows XP. -- http://mail.python.org/mailman/listinfo/python-list contact at xavierho Nov3,2009,5:24AM Post #3 of 6 (13595 views) Permalink Re: Help resolve a syntax error on 'as' keyword (python 2.5) [In reply Also, Transparency and bleeding thru' issue is still a problem.Thanks. What, sir, | `\ do you do with new information?” —John Maynard Keynes | _o__) | Ben Finney -- http://mail.python.org/mailman/listinfo/python-list gagsl-py2 at yahoo Nov3,2009,4:57PM Post #6 of 6 (13562 views) Permalink Re: Help

I'm using Python 2.5 on Windows XP. The except syntax does *not* bind the target to a message object, it binds the target to an exception object. How do I help minimize interruptions during group meetings as a student? Jul 26 '14 at 18:10 This question has been asked before and already has an answer.

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Python 3.4.30good way to generalize multiple try except Hot Network Questions How to add an sObject to a sublislist? Personal Open source Business Explore Sign up Sign in Pricing Blog Support Search GitHub This repository Watch 134 Star 805 Fork 229 dagwieers/unoconv Code Issues 108 Pull requests 14 Projects You should use "except Exception, variable" syntax in 2.x series. but, I find it impossible to type in a terminal with every other application menu bleeding thru' ?

but, I find it impossible to type in a terminal with every other application menu bleeding thru' ?--------------------------------------------------------regarding "2./": The terminal problem in "2./" above is now fixed.changed "#!/usr/bin/env python" in Error in using repeat mask genome for tophat2 Hi I used Aegilops repeat mask genome for Tophat2 genome option, but it showed this error: [201... ADD REPLY • link written 15 months ago by Christian • 10 Hi pcsam.2008 , did Devon's suggestion work for you? Cheers!

Weird Tophat2 Error Message I am trying to run tophat2 on a set of SE reads: tophat2 ../../../references/genomes/xen-trop/en... All I'm trying to do is to print the error message using the following code (copying/pasting from IDLE). Cheers. Thanks   rna-seq tophat python • 1.0k views ADD COMMENT • link • Not following Follow via messages Follow via email Do not follow modified 12 months ago • written 17

Find More Posts by peromhc 02-08-2012, 08:08 AM #3 ercfrtz Member Location: Iowa Join Date: Aug 2010 Posts: 23 Code: /shared/local/tophat-1.4.1.Linux_x86_64/tophat -r 100 -o /storage/isu/reecy_lab/tmp_eric/new.Lee.data/kph /storage/isu/reecy_lab/tmp_eric/index/b_taurus/umd3.1/mitoy/bos_taurus_all /storage/isu/reecy_lab/tmp_eric/new.Lee.data/kph/all.animals_1.fq /storage/isu/reecy_lab/tmp_eric/new.Lee.data/kph/all.animals_2.fq That all off sudden, my tophat/bowtie run gives me this error: Traceback (most recent call last): F... It would be clearer to write the above code as: try: div(5, 0) except Exception as exc: print(exc) since the target ‘exc’ names an exception object, not a message. (The ‘print’ Hi there, I have ran TopHat successfully with the fusions.out also.

The time now is 01:06 AM. Last edited by scjet (2010-12-01 10:12:16) Offline #2 2010-12-01 10:48:03 scjet Member Registered: 2010-12-01 Posts: 1,461 Re: Python syntax errors: oblogout, archbey, Transparency/tint2 issues ? Use this form: try: div(5, 0) except Exception, exc: print exc -- \ “When I get new information, I change my position. need to separate read1 and read2 to run tophat2 I have paired-end RNA-Seq data - read1 and read2 - stored in the same fastq file.

Click here to register now, and join the discussion Community Links Members List Search Forums Show Threads Show Posts Tag Search Advanced Search Go to Page... Latest Open RNA-Seq ChIP-Seq SNP Assembly Tutorials Tools Jobs Forum Planet All » View Posts Latest Open RNA-Seq ChIP-Seq SNP Assembly Tutorials Tools Jobs Forum Planet All » Home about • faq • rss Community Log In Sign Up Add New Post Question: Tophat2 shows error during running 0 17 months ago by Whoknows • 420 Tehran,Iran Whoknows • 420 How to get the alignment summary of HISAT2 Hi, I was trying to HISAT2, which is suppose to be the improved version of tophat or tophat2, [HI...

You signed in with another tab or window. ercfrtz View Public Profile Send a private message to ercfrtz Find More Posts by ercfrtz 11-20-2014, 09:47 AM #5 blancha Senior Member Location: Montreal Join Date: May 2013 Posts: